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Software Tools

GINsim GINsim (Gene Interaction Network simulation) is a software tool for the modelling and simulation of genetic regulatory networks. It consists of a simulator of qualitative models of genetic regulatory networks based on a discrete, logical formalism. It allows the user to specify a model of a genetic regulatory network in terms of multivalued logical functions, with a synchronous or asynchronous updating policy and analyse its qualitative dynamical behaviours.

EpiLog EpiLog (Epithelium Logical modelling) is a software tool for the qualitative simulation of epithelial patterning. It makes use of LogicalModel to implement a cellular automata, defining a convenient framework for the qualitative modelling of epithelium pattern formation. It supports different logical models per cell, integration functions and the definition of mutants.